Nucleic acids detection by dot-blot method

Marcela Vlcnovska, Kristyna Smerkova, Marketa Vaculovicova, Sona Krizkova, Rene Kizek

Dot-blot is one of biological methods that are normally used in research laboratories and especially in the diagnostics. It is the most commonly used method for identification and immunodetection of particular proteins which may be markers of various diseases. The main aim of the experiment was to develop a simple, inexpensive and rapid method for specific detection of nucleic acids, especially DNA, and then this procedure apply to the detection of DNA modified by platinum cytostatic drugs. Despite platinum cytostatic drugs‘ common use in chemotherapy of various cancer types, their biochemical effect is still not completely clear. The generally accepted opinion is that the drug binds to cellular DNA. It was observed that cisplatin is bound to the DNA the most compared to oxaliplatin and carboplatin.

img
Fig. 1 Concentration series of DNA

istanbul
Tab. 1 Convert concentration on weight DNA in 2 ml of sample

istanbul
Figure 1 Dependence of color intensity spot on the amount of DNA (inset - linear portion of the curve)

istanbul
Fig. 2 The intensity of blotting membranes depending on the length blocks and using blocking solution

istanbul
Fig. 3 Dot-blot platinum DNA adducts

istanbul
Figure 2 Dependence of color intensity of the spot on the quantity and type of the applied cytostatic drug

1. Scitable by nature education; Northern blot; [online]. [cit. 2014-01-20] Dostupné z: http://www.nature.com/scitable/definition/northern-blot-287.
2. Scitable by nature education; Southern blot; [online]. [cit. 2014-01-20] Dostupné z: http://www.nature.com/scitable/definition/southern-blot-289.
3. Dot Blot Analysis; Teacher's Guidebook; [online]. [cit. 2014-01-20] Dostupné z: http://www.gbiosciences.com/PDF/Protocol/502_Dot_Blot_Analysis_TEACHER.pdf.
4. Ceppellini R., Polli E., Celada F.: Proceedings of the Society for Experimental Biology and Medicine, 96, 572 (1957).
5. Rothfiel.Nf, Stollar B. D.: Journal of Clinical Investigation, 46, 1785 (1967).
6. Schur P. H., Sandson J.: New England Journal of Medicine, 278, 533 (1968).
7. Tojo T., Friou G. J.: Science, 161, 904 (1968).
8. Fuertes M. A., Castilla J., Alonso C., Perez J. M.: Curr. Med. Chem., 10, 257 (2003).
9. Wang D., Lippard S. J.: Nat. Rev. Drug Discov., 4, 307 (2005).
10. Krizkova S., Adam V., Eckschlager T., Kizek R.: Electrophoresis, 30, 3726 (2009).